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Studna View [download] is the exploring display for the
Studna bioinformatics tools.
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- the estimations part is for 'by chance' occurrence probabilities
- the incidences part is for display of actual occurrence frequencies
- the sequences part is for visual search of particular sequences
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Several key-bindings are available to export presented data into clipboard.
You can use Ctrl-A for estimations and incidences when
a data cell is focused. You can use Ctrl-V to paste it into a text editor
or spreadsheat then.
Copy of selected sequences that you can paste via Ctrl-V into an editor, can be done via:
- Ctrl-C for the whole selected area
- Ctrl-R for the rectangle specified by selection beginning and end, plus name lines
- Ctrl-G for just sequence parts at the rectangle set by selection beginning and end
Along with that, Ctrl-S at the sequences part can be used to highlight a found tuplet pair
that is the first one next to the currently selected sequence region.
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The Studna View is a script
written in the Tcl/Tk programming language.
It needs the Tcl
interpreter to be installed.
Both the Studna tools and the Tcl interpreter are open source software.
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